Resources for Poultry Genome Mapping--ISAG Workshop, 1998

REFERENCE FAMILIES

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East Lansing reference population: Red Jungle Fowl x White Leghorn Backcross

400 progeny. Subset of 52 BC serves as routinely genotyped population. DNA available

Wageningen reference population: F₂ of two extreme White Plymouth Rock broiler lines

465 progeny

WEBSITES/DATABASES

Site	Location	Maintained by:	URL
Roslin Inst. Homepage (Chickgbase)	Roslin Inst., Edinburgh	Dave Burt, Dave.Burt@bbsrc.ac.uk	www.ri.bbsrc.ac.uk/chickmap/ChickMapHomePage.html
NAGRP Chickgbase mirror site	Iowa State U., Ames	Max Rothschild	http://www.genome.iastate.edu
NAGRP Poultry Homepage	Mich. State U., East Lansing	J. Dodgson & H. Cheng	http://poultry.mph.msu.edu
Wageningen Homepage	Wageningen Agricultural U.	M.A.M Groenen	www.zod.wau.nl/vf/chickensite/chicken.html

PRIMER KITS

Kit	No. of primer pairs	More info:	Notes
Microsatellite #1	120	http://poultry.mph.msu.edu
Microsatellite #2	124	http://poultry.mph.msu.edu
Microsatellite #3	275	http://poultry.mph.msu.edu
Microsatellite #4	56	http://poultry.mph.msu.edu
Microsatellite #5	37	http://poultry.mph.msu.edu
Microsatellite #6	35	http://poultry.mph.msu.edu
Population starter kit:	9	http://poultry.mph.msu.edu	microsatellites with 6 to 10 alleles each
Gene Kit #1	200	http://poultry.mph.msu.edu	available individually or groups of up to 20

Microsatellites are polymorphic in at least one of the 3 reference families

Contact J.B. Dodgson/H.H. Cheng, dodgson@msu.edu , hcheng@msu.edu

RADIATION HYBRID PANELS

N. Bumstead (status unknown; as reported at PAG VI quail-chicken hybrids are being tested.)

C. Kwok et al., NAR 26:3562-3566. Contact C. Kwok, cheni_kwok-1@sbphrd.com (Chicken-hamster hybrid panel was incomplete at time of publication.)

EST (expressed sequence tags)

Joan Burnside in collaboration with DuPont and the State of Delaware (contact: Joan Burnside for availability, joan@Udel.edu).

LIBRARIES

Type	Constructed by:	Contact:
BAC	M.A.M Groenen and R.P.M.A Crooijmans	richard.crooijmans@alg.vf.wau.nl
BAC	J.B. Dodgson	dodgson@msu.edu
BAC	C. Auffrey, R. Zoorob, and A. Vignal	vignal@autan.toulouse.inra.fr
PAC	C. Auffrey, R. Zoorob, and A. Vignal	vignal@autan.toulouse.inra.fr
YAC	A.A. Toye, L. Schalkwyk, H. Lehrach, and N. Bumstead	Ressourcenzentrum im Deutschen Humangenomprojekt (http://www.rzpd.de)
Cosmid	L. Schalkwyk, H.R. Fries, M. Weiher, and J. Buitkamp	Ressourcenzentrum im Deutschen Humangenomprojekt (http://www.rzpd.de)
Cosmid	Stratagene	(http://www.stratagene.com)
Cosmid	Clontech	(http://www.clontech.com)
E1 chick embryo cDNA	H.H Arnold, B. Andree, and T. Brand	Ressourcenzentrum im Deutschen Humangenomprojekt (http://www.rzpd.de)
Erythroid and total embryo cDNA libraries	M. Yamamoto, J.D. Engel, J.B. Dodgson	dodgson@msu.edu
Early embryonic developmental stage cDNAs	A. Gibbins	agibbins@aps.uoguelph.ca
Various cell line cDNAs	D. Foster	foste001@maroon.tc.umn.edu
Lymphoid (and other) cDNAs	J. Burnside	joan@Udel.edu
Adipose, secondary fibroblast, heart, intestinal mucosa, liver, and muscle cDNAs	Stratagene	http://www.stratagene.com
Embryo, brain cDNAs	Clontech	http://www.clontech.com
lambda genomic	Stratagene	http://www.stratagene.com
lambda genomic	Clontech	http://www.clontech.com
lambda genomic	J.B. Dodgson	dodgson@msu.edu
Chromosome-specific libraries	A. Ponce de Leon; Richard Griffiths	apl@tc.umn.edu r.griffiths@bio.gla.ac.uk

TURKEY GENOME RESOURCES

Turkey resources
Various including BYU map population maintained by E. Smith edsmith@acd.tusk.edu. See Turkey genome website at Tuskegee	Turkey genome website at Tuskegee
British United Turkey mapping population	?
U. Minn./ISU microsatellites, resource population, other resources in prep.	Craig Beattie, cbeattie@tc.umn.edu